Detailed information of SNP:
|
SNP ID:
sf0429849919(Gbrowse)
Chromosome: chr04 Position: 29849919 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.59% | 43.41% |
| All Indica | 799 | 57.20% | 42.80% |
| All Japonica | 497 | 64.59% | 35.41% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 72.80% | 27.20% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429849919 | A->G | INTERGENIC | None |