Detailed information of SNP:
|
SNP ID:
sf0429851832(Gbrowse)
Chromosome: chr04 Position: 29851832 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1220 | 54.18% | 45.82% |
| All Indica | 776 | 57.86% | 42.14% |
| All Japonica | 329 | 58.66% | 41.34% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 365 | 72.60% | 27.40% |
| Indica II | 208 | 17.31% | 82.69% |
| Indica Intermediate | 203 | 72.91% | 27.09% |
| Temperate Japonica | 175 | 72.57% | 27.43% |
| Tropical Japonica | 92 | 14.13% | 85.87% |
| Japonica Intermediate | 62 | 85.48% | 14.52% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 37 | 32.43% | 67.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429851832 | T->C | INTERGENIC | None |