Detailed information of SNP:
|
SNP ID:
sf0429853747(Gbrowse)
Chromosome: chr04 Position: 29853747 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.88% | 25.12% |
| All Indica | 797 | 58.59% | 41.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 209 | 73.68% | 26.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429853747 | T->C | INTERGENIC | None |