Detailed information of SNP:
|
SNP ID:
sf0429892309(Gbrowse)
Chromosome: chr04 Position: 29892309 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.34% | 38.66% |
| All Indica | 796 | 94.35% | 5.65% |
| All Japonica | 496 | 6.25% | 93.75% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0429892309 | T->C | INTERGENIC | None |