Detailed information of SNP:
|
SNP ID:
sf0430016910(Gbrowse)
Chromosome: chr04 Position: 30016910 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.76% | 37.24% |
| All Indica | 798 | 36.22% | 63.78% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 51.87% | 48.13% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430016910 | T->C | INTERGENIC | None |