Detailed information of SNP:
|
SNP ID:
sf0430017721(Gbrowse)
Chromosome: chr04 Position: 30017721 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.51% | 37.49% |
| All Indica | 799 | 35.79% | 64.21% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 52.00% | 48.00% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430017721 | C->A | INTERGENIC | None |