Detailed information of SNP:



SNP ID: sf0430017721(Gbrowse)

Chromosome: chr04

Position: 30017721
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1419 62.51% 37.49%
All Indica799 35.79% 64.21%
All Japonica497 98.99% 1.01%
Aus67 91.04% 8.96%
Indica I375 52.00% 48.00%
Indica II213 17.37% 82.63%
Indica Intermediate211 25.59% 74.41%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 94.68% 5.32%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 80.95% 19.05%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0430017721 C->A INTERGENIC None