Detailed information of SNP:
|
SNP ID:
sf0430108697(Gbrowse)
Chromosome: chr04 Position: 30108697 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 90.52% | 9.48% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 492 | 79.47% | 20.53% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 91 | 47.25% | 52.75% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430108697 | C->T | INTERGENIC | None |