Detailed information of SNP:
|
SNP ID:
sf0430159206(Gbrowse)
Chromosome: chr04 Position: 30159206 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 98.08% | 1.92% |
| All Indica | 793 | 98.49% | 1.51% |
| All Japonica | 490 | 97.14% | 2.86% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430159206 | C->T | LOC_Os04g51210(LOC_Os04g51210.1) | INTRON |