Detailed information of SNP:
|
SNP ID:
sf0430172142(Gbrowse)
Chromosome: chr04 Position: 30172142 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 60.22% | 39.78% |
| All Indica | 773 | 87.06% | 12.94% |
| All Japonica | 487 | 24.85% | 75.15% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 367 | 88.01% | 11.99% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 197 | 85.79% | 14.21% |
| Temperate Japonica | 330 | 9.70% | 90.30% |
| Tropical Japonica | 90 | 65.56% | 34.44% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430172142 | T->C | INTERGENIC | None |