Detailed information of SNP:



SNP ID: sf0430179076(Gbrowse)

Chromosome: chr04

Position: 30179076
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 65.91% 34.09%
All Indica799 97.37% 2.63%
All Japonica496 10.48% 89.52%
Aus67 100.00% 0.00%
Indica I375 98.67% 1.33%
Indica II213 97.18% 2.82%
Indica Intermediate211 95.26% 4.74%
Temperate Japonica334 6.89% 93.11%
Tropical Japonica94 15.96% 84.04%
Japonica Intermediate68 20.59% 79.41%
Group VI/Aromatic14 78.57% 21.43%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0430179076 T->C INTERGENIC None