Detailed information of SNP:
|
SNP ID:
sf0430179747(Gbrowse)
Chromosome: chr04 Position: 30179747 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 72.22% | 27.78% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 491 | 27.90% | 72.10% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 332 | 10.54% | 89.46% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 65 | 58.46% | 41.54% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430179747 | T->A | INTERGENIC | None |