Detailed information of SNP:
|
SNP ID:
sf0430179999(Gbrowse)
Chromosome: chr04 Position: 30179999 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 96.07% | 3.93% |
| All Indica | 753 | 94.95% | 5.05% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 47 | 85.11% | 14.89% |
| Indica I | 357 | 97.20% | 2.80% |
| Indica II | 200 | 92.00% | 8.00% |
| Indica Intermediate | 196 | 93.88% | 6.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430179999 | C->T | INTERGENIC | None |