Detailed information of SNP:
|
SNP ID:
sf0430180145(Gbrowse)
Chromosome: chr04 Position: 30180145 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 63.56% | 36.44% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 445 | 12.81% | 87.19% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 324 | 5.86% | 94.14% |
| Tropical Japonica | 73 | 34.25% | 65.75% |
| Japonica Intermediate | 48 | 27.08% | 72.92% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430180145 | T->G | INTERGENIC | None |