Detailed information of SNP:
|
SNP ID:
sf0430267333(Gbrowse)
Chromosome: chr04 Position: 30267333 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.35% | 49.65% |
| All Indica | 797 | 34.63% | 65.37% |
| All Japonica | 497 | 79.28% | 20.72% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 49.20% | 50.80% |
| Indica II | 213 | 20.66% | 79.34% |
| Indica Intermediate | 210 | 22.86% | 77.14% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430267333 | G->C | INTERGENIC | None |