Detailed information of SNP:
|
SNP ID:
sf0430281571(Gbrowse)
Chromosome: chr04 Position: 30281571 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.86% | 6.14% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 84.48% | 15.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430281571 | C->A | LOC_Os04g51440(LOC_Os04g51440.1) | INTRON |
| sf0430281571 | C->A | LOC_Os04g51440(LOC_Os04g51440.2) | INTRON |