Detailed information of SNP:
|
SNP ID:
sf0430329224(Gbrowse)
Chromosome: chr04 Position: 30329224 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.12% | 10.88% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 494 | 84.41% | 15.59% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430329224 | A->T | INTERGENIC | None |