Detailed information of SNP:
|
SNP ID:
sf0430343051(Gbrowse)
Chromosome: chr04 Position: 30343051 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 56.95% | 43.05% |
| All Indica | 790 | 66.71% | 33.29% |
| All Japonica | 491 | 46.64% | 53.36% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 54.30% | 45.70% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 206 | 66.99% | 33.01% |
| Temperate Japonica | 330 | 46.06% | 53.94% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430343051 | A->G | LOC_Os04g51530(LOC_Os04g51530.1) | Non-Synonymous SNP |