Detailed information of SNP:
|
SNP ID:
sf0430353154(Gbrowse)
Chromosome: chr04 Position: 30353154 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 83.90% | 16.10% |
| All Indica | 788 | 85.15% | 14.85% |
| All Japonica | 496 | 86.29% | 13.71% |
| Aus | 64 | 48.44% | 51.56% |
| Indica I | 371 | 76.55% | 23.45% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 204 | 87.25% | 12.75% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430353154 | G->T | INTERGENIC | None |