Detailed information of SNP:
|
SNP ID:
sf0430353189(Gbrowse)
Chromosome: chr04 Position: 30353189 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 92.80% | 7.20% |
| All Indica | 795 | 95.47% | 4.53% |
| All Japonica | 470 | 91.70% | 8.30% |
| Aus | 43 | 55.81% | 44.19% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 331 | 96.07% | 3.93% |
| Tropical Japonica | 81 | 83.95% | 16.05% |
| Japonica Intermediate | 58 | 77.59% | 22.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430353189 | C->T | INTERGENIC | None |