Detailed information of SNP:
|
SNP ID:
sf0430369097(Gbrowse)
Chromosome: chr04 Position: 30369097 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.28% | 10.72% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 84.68% | 15.32% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430369097 | C->T | LOC_Os04g51580(LOC_Os04g51580.2) | INTRON |
| sf0430369097 | C->T | LOC_Os04g51580(LOC_Os04g51580.1) | INTRON |