Detailed information of SNP:
|
SNP ID:
sf0430372811(Gbrowse)
Chromosome: chr04 Position: 30372811 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 88.77% | 11.23% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 495 | 84.04% | 15.96% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 92 | 64.13% | 35.87% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430372811 | C->T | LOC_Os04g51580(LOC_Os04g51580.1) | INTRON |