Detailed information of SNP:
|
SNP ID:
sf0430373568(Gbrowse)
Chromosome: chr04 Position: 30373568 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 93.83% | 6.17% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 491 | 94.70% | 5.30% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430373568 | A->T | INTERGENIC | None |