Detailed information of SNP:
|
SNP ID:
sf0430385406(Gbrowse)
Chromosome: chr04 Position: 30385406 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 95.06% | 4.94% |
| All Indica | 763 | 99.08% | 0.92% |
| All Japonica | 418 | 86.84% | 13.16% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 348 | 99.43% | 0.57% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 284 | 81.34% | 18.66% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 96.36% | 3.64% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 35 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430385406 | C->T | LOC_Os04g51600(LOC_Os04g51600.1) | INTRON |