Detailed information of SNP:
|
SNP ID:
sf0430410398(Gbrowse)
Chromosome: chr04 Position: 30410398 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 65.42% | 34.58% |
| All Indica | 799 | 40.93% | 59.07% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 20.66% | 79.34% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430410398 | A->G | INTERGENIC | None |