Detailed information of SNP:
|
SNP ID:
sf0430420794(Gbrowse)
Chromosome: chr04 Position: 30420794 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.05% | 10.95% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 496 | 84.07% | 15.93% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 94.91% | 5.09% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430420794 | A->T | LOC_Os04g51640(LOC_Os04g51640.1) | Non-Synonymous SNP |