Detailed information of SNP:
|
SNP ID:
sf0430420937(Gbrowse)
Chromosome: chr04 Position: 30420937 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 88.94% | 11.06% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430420937 | A->G | LOC_Os04g51640(LOC_Os04g51640.1) | Non-Synonymous SNP |