Detailed information of SNP:
|
SNP ID:
sf0430426165(Gbrowse)
Chromosome: chr04 Position: 30426165 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 72.81% | 27.19% |
| All Indica | 796 | 93.97% | 6.03% |
| All Japonica | 486 | 45.68% | 54.32% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 373 | 92.49% | 7.51% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 324 | 43.83% | 56.17% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430426165 | T->C | INTERGENIC | None |