Detailed information of SNP:
|
SNP ID:
sf0430426169(Gbrowse)
Chromosome: chr04 Position: 30426169 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 72.76% | 27.24% |
| All Indica | 797 | 94.23% | 5.77% |
| All Japonica | 486 | 45.06% | 54.94% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 324 | 43.21% | 56.79% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430426169 | T->C | INTERGENIC | None |