Detailed information of SNP:
|
SNP ID:
sf0430426183(Gbrowse)
Chromosome: chr04 Position: 30426183 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 70.85% | 29.15% |
| All Indica | 795 | 65.79% | 34.21% |
| All Japonica | 492 | 78.86% | 21.14% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 52.15% | 47.85% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 331 | 90.03% | 9.97% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430426183 | A->G | INTERGENIC | None |