Detailed information of SNP:
|
SNP ID:
sf0430426265(Gbrowse)
Chromosome: chr04 Position: 30426265 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1276 | 84.64% | 15.36% |
| All Indica | 788 | 98.35% | 1.65% |
| All Japonica | 425 | 58.12% | 41.88% |
| Aus | 12 | 100.00% | 0.00% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 201 | 98.51% | 1.49% |
| Temperate Japonica | 322 | 49.69% | 50.31% |
| Tropical Japonica | 61 | 91.80% | 8.20% |
| Japonica Intermediate | 42 | 73.81% | 26.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430426265 | A->C | INTERGENIC | None |