Detailed information of SNP:
|
SNP ID:
sf0430427067(Gbrowse)
Chromosome: chr04 Position: 30427067 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 54.40% | 45.60% |
| All Indica | 799 | 38.80% | 61.20% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 54.13% | 45.87% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430427067 | T->G | INTERGENIC | None |