Detailed information of SNP:
|
SNP ID:
sf0430427520(Gbrowse)
Chromosome: chr04 Position: 30427520 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.91% | 41.09% |
| All Indica | 799 | 62.33% | 37.67% |
| All Japonica | 497 | 52.11% | 47.89% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 46.13% | 53.87% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 53.43% | 46.57% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430427520 | G->A | INTERGENIC | None |