Detailed information of SNP:
|
SNP ID:
sf0430432034(Gbrowse)
Chromosome: chr04 Position: 30432034 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 77.61% | 22.39% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 495 | 54.14% | 45.86% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 333 | 56.16% | 43.84% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430432034 | C->A | INTERGENIC | None |