Detailed information of SNP:
|
SNP ID:
sf0430432107(Gbrowse)
Chromosome: chr04 Position: 30432107 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 77.53% | 22.47% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 495 | 54.34% | 45.66% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 333 | 56.46% | 43.54% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430432107 | C->A | INTERGENIC | None |