Detailed information of SNP:
|
SNP ID:
sf0430434058(Gbrowse)
Chromosome: chr04 Position: 30434058 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.65% | 21.35% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 56.14% | 43.86% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 59.10% | 40.90% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430434058 | A->G | INTERGENIC | None |