Detailed information of SNP:
|
SNP ID:
sf0430455524(Gbrowse)
Chromosome: chr04 Position: 30455524 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 88.87% | 11.13% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 465 | 69.68% | 30.32% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 325 | 60.92% | 39.08% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 52 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430455524 | A->T | INTERGENIC | None |