Detailed information of SNP:
|
SNP ID:
sf0430488594(Gbrowse)
Chromosome: chr04 Position: 30488594 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 92.91% | 7.09% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 491 | 80.45% | 19.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 72.42% | 27.58% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430488594 | C->T | LOC_Os04g51760(LOC_Os04g51760.1) | Non-Synonymous SNP |