Detailed information of SNP:
|
SNP ID:
sf0430506590(Gbrowse)
Chromosome: chr04 Position: 30506590 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1234 | 91.73% | 8.27% |
| All Indica | 757 | 98.68% | 1.32% |
| All Japonica | 384 | 90.89% | 9.11% |
| Aus | 56 | 7.14% | 92.86% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 190 | 100.00% | 0.00% |
| Indica Intermediate | 195 | 95.38% | 4.62% |
| Temperate Japonica | 316 | 99.68% | 0.32% |
| Tropical Japonica | 37 | 32.43% | 67.57% |
| Japonica Intermediate | 31 | 70.97% | 29.03% |
| Group VI/Aromatic | 5 | 80.00% | 20.00% |
| Intermediate | 32 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430506590 | G->T | LOC_Os04g51794(LOC_Os04g51794.2) | INTRON |
| sf0430506590 | G->T | LOC_Os04g51794(LOC_Os04g51794.1) | INTRON |