Detailed information of SNP:
|
SNP ID:
sf0430552736(Gbrowse)
Chromosome: chr04 Position: 30552736 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 81.38% | 18.62% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 496 | 65.93% | 34.07% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430552736 | G->T | LOC_Os04g51830(LOC_Os04g51830.1) | INTRON |