Detailed information of SNP:
|
SNP ID:
sf0430552781(Gbrowse)
Chromosome: chr04 Position: 30552781 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 80.95% | 19.05% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 495 | 66.06% | 33.94% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 334 | 88.32% | 11.68% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430552781 | G->A | LOC_Os04g51830(LOC_Os04g51830.1) | INTRON |