Detailed information of SNP:
|
SNP ID:
sf0430559010(Gbrowse)
Chromosome: chr04 Position: 30559010 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 95.38% | 4.62% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 446 | 87.22% | 12.78% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 288 | 80.90% | 19.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430559010 | G->A | LOC_Os04g51840(LOC_Os04g51840.1) | INTRON |