Detailed information of SNP:
|
SNP ID:
sf0430559371(Gbrowse)
Chromosome: chr04 Position: 30559371 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 95.54% | 4.46% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 64 | 35.94% | 64.06% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430559371 | C->T | LOC_Os04g51840(LOC_Os04g51840.1) | Synonymous |