Detailed information of SNP:
|
SNP ID:
sf0430559971(Gbrowse)
Chromosome: chr04 Position: 30559971 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.25% | 39.75% |
| All Indica | 799 | 31.41% | 68.59% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 13.60% | 86.40% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 211 | 27.96% | 72.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430559971 | G->C | LOC_Os04g51840(LOC_Os04g51840.1) | Non-Synonymous SNP |