Detailed information of SNP:
|
SNP ID:
sf0430564679(Gbrowse)
Chromosome: chr04 Position: 30564679 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 52.78% | 47.22% |
| All Indica | 792 | 75.76% | 24.24% |
| All Japonica | 489 | 25.15% | 74.85% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 33.96% | 66.04% |
| Indica Intermediate | 205 | 79.51% | 20.49% |
| Temperate Japonica | 328 | 35.06% | 64.94% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430564679 | T->C | LOC_Os04g51850(LOC_Os04g51850.1) | Synonymous |