Detailed information of SNP:
|
SNP ID:
sf0430620863(Gbrowse)
Chromosome: chr04 Position: 30620863 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 83.07% | 16.93% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 494 | 66.60% | 33.40% |
| Aus | 65 | 21.54% | 78.46% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 88.66% | 11.34% |
| Tropical Japonica | 92 | 13.04% | 86.96% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430620863 | C->T | LOC_Os04g51920(LOC_Os04g51920.1) | Non-Synonymous SNP |