Detailed information of SNP:
|
SNP ID:
sf0430627882(Gbrowse)
Chromosome: chr04 Position: 30627882 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.30% | 32.70% |
| All Indica | 799 | 78.22% | 21.78% |
| All Japonica | 495 | 48.89% | 51.11% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 333 | 38.74% | 61.26% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430627882 | A->G | LOC_Os04g51930(LOC_Os04g51930.1) | Synonymous |