Detailed information of SNP:
|
SNP ID:
sf0430635782(Gbrowse)
Chromosome: chr04 Position: 30635782 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 72.74% | 27.26% |
| All Indica | 799 | 80.10% | 19.90% |
| All Japonica | 495 | 60.61% | 39.39% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 37.56% | 62.44% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 333 | 46.55% | 53.45% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430635782 | C->T | INTERGENIC | None |