Detailed information of SNP:
|
SNP ID:
sf0430671720(Gbrowse)
Chromosome: chr04 Position: 30671720 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 67.74% | 32.26% |
| All Indica | 797 | 88.46% | 11.54% |
| All Japonica | 485 | 40.21% | 59.79% |
| Aus | 63 | 23.81% | 76.19% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 211 | 82.46% | 17.54% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 333 | 34.23% | 65.77% |
| Tropical Japonica | 85 | 68.24% | 31.76% |
| Japonica Intermediate | 67 | 34.33% | 65.67% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430671720 | G->A | INTERGENIC | None |