Detailed information of SNP:
|
SNP ID:
sf0430712332(Gbrowse)
Chromosome: chr04 Position: 30712332 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 85.45% | 14.55% |
| All Indica | 798 | 82.33% | 17.67% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430712332 | T->C | LOC_Os04g52020(LOC_Os04g52020.1) | INTRON |