Detailed information of SNP:
|
SNP ID:
sf0430756114(Gbrowse)
Chromosome: chr04 Position: 30756114 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.81% | 38.19% |
| All Indica | 796 | 77.51% | 22.49% |
| All Japonica | 496 | 43.95% | 56.05% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 373 | 81.50% | 18.50% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 334 | 60.78% | 39.22% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0430756114 | T->C | INTERGENIC | None |